Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs60252481 chr6:28419535 GT/G 0 132 46.3 25.38 0.57 KM Plot
TGCT rs6028552 chr20:38243842 G/T 6.62E-7 134 42.27 68.07 0.57 KM Plot
TGCT rs60294349 chr2:54807957 G/A 5.57E-5 127 45.7 46.3 24.23 KM Plot
TGCT rs60374430 chr16:27817730 G/A 1.41E-5 129 45.1 38.2 17.27 KM Plot
TGCT rs60509041 chr18:32802124 C/CGTACACATCCAGATGGCT 0.000108 131 17.1 31.2 48.12 KM Plot
TGCT rs60542979 chr5:1804931 C/G 6.08E-6 132 42.27 45.83 24.73 KM Plot
TGCT rs60548640 chr5:54063699 C/G 7.17E-7 133 46.3 33.53 41.58 KM Plot
TGCT rs60608368 chr6:41343633 TG/T 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs60649017 chr6:42575390 G/C 2.74E-8 133 20.6 51.67 37.7 KM Plot
TGCT rs6065934 chr20:44790824 T/C 0.000157 132 37.62 70.6 33.45 KM Plot
TGCT rs60691639 chr4:37239925 T/C 0 134 46.07 31.75 0.5 KM Plot
TGCT rs6074052 chr20:44793834 C/T 0.000157 132 37.62 70.6 33.45 KM Plot
TGCT rs60860517 chr14:71029919 A/C 1.44E-5 133 38.2 66.18 21.43 KM Plot
TGCT rs61103305 chr6:157000042 C/CA 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs61144178 chr10:1156943 CAT/C 1.35E-13 134 42.03 66.9 17.1 KM Plot